SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

tRNA-intron endonuclease catalytic domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 4 SUPERFAMILY models representing the tRNA-intron endonuclease catalytic domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049078 87 2008-09-10 d1r0va1 tRNA-intron endonuclease catalytic domain-like
0053983 47 2010-05-31 d2gw6a1 tRNA-intron endonuclease catalytic domain-like
0045728 207 2008-09-10 d1a79a1 tRNA-intron endonuclease catalytic domain-like
0049079 186 2008-09-10 d1r0va2 tRNA-intron endonuclease catalytic domain-like