SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Translational machinery components superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 10 SUPERFAMILY models representing the Translational machinery components superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047384 894 2008-09-10 d1ilya_ Ribosomal protein L18 and S11
0054002 500 2010-05-31 d2gycm1 Ribosomal protein L18 and S11
0046799 503 2008-09-10 d1fjgk_ Ribosomal protein L18 and S11
0048651 734 2008-09-10 d1ovya_ Ribosomal protein L18 and S11
0046769 1006 2008-09-10 d1ffkk_ Ribosomal protein L18 and S11
0054783 916 2010-05-31 d2zjrl1 Ribosomal protein L18 and S11
0054592 902 2010-05-31 d2qalk1 Ribosomal protein L18 and S11
0046396 249 2008-09-10 d1dt9a1 ERF1/Dom34 middle domain-like
0054716 151 2010-05-31 d2vgna2 ERF1/Dom34 middle domain-like
0054610 138 2010-05-31 d2qi2a2 ERF1/Dom34 middle domain-like