SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Zn-dependent exopeptidases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 48 SUPERFAMILY models representing the Zn-dependent exopeptidases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0052091 1488 2008-09-10 d2c1ca1 Pancreatic carboxypeptidases
0046194 1225 2008-09-10 d1cpb.1 Pancreatic carboxypeptidases
0048430 1322 2008-09-10 d1nsaa1 Pancreatic carboxypeptidases
0052020 1500 2008-09-10 d2bo9a1 Pancreatic carboxypeptidases
0047901 1305 2008-09-10 d1kwma1 Pancreatic carboxypeptidases
0051496 1237 2008-09-10 d1z5ra1 Pancreatic carboxypeptidases
0046397 1296 2008-09-10 d1dtda_ Pancreatic carboxypeptidases
0048735 1572 2008-09-10 d1pcab1 Pancreatic carboxypeptidases
0048085 1281 2008-09-10 d1m4la_ Pancreatic carboxypeptidases
0050015 1415 2008-09-10 d1uwya2 Pancreatic carboxypeptidases
0047657 1360 2008-09-10 d1jqga1 Pancreatic carboxypeptidases
0048989 1388 2008-09-10 d1qmua2 Pancreatic carboxypeptidases
0048537 1302 2008-09-10 d1obra_ Carboxypeptidase T
0038334 356 2005-09-08 d1gyta2 Leucine aminopeptidase, C-terminal domain
0040437 357 2005-09-08 d1lama1 Leucine aminopeptidase, C-terminal domain
0050182 1000 2008-09-10 d1vhea2 Bacterial dinuclear zinc exopeptidases
0051389 2205 2008-09-10 d1ysja1 Bacterial dinuclear zinc exopeptidases
0043109 262 2005-09-08 d1r3na1 Bacterial dinuclear zinc exopeptidases
0047971 3185 2008-09-10 d1lfwa1 Bacterial dinuclear zinc exopeptidases
0049240 2520 2008-09-10 d1rtqa_ Bacterial dinuclear zinc exopeptidases
0051172 1481 2008-09-10 d1y0ya2 Bacterial dinuclear zinc exopeptidases
0053284 2255 2008-09-10 d2q43a1 Bacterial dinuclear zinc exopeptidases
0046827 951 2008-09-10 d1fnoa4 Bacterial dinuclear zinc exopeptidases
0048899 4986 2008-09-10 d1q7l.1 Bacterial dinuclear zinc exopeptidases
0050200 3713 2008-09-10 d1vixa1 Bacterial dinuclear zinc exopeptidases
0050176 4192 2008-09-10 d1vgya1 Bacterial dinuclear zinc exopeptidases
0051343 728 2008-09-10 d1yloa2 Bacterial dinuclear zinc exopeptidases
0049011 1236 2008-09-10 d1qq9a_ Bacterial dinuclear zinc exopeptidases
0050184 1487 2008-09-10 d1vhoa2 Bacterial dinuclear zinc exopeptidases
0052787 2089 2008-09-10 d2fvga2 Bacterial dinuclear zinc exopeptidases
0046134 4447 2008-09-10 d1cg2a1 Bacterial dinuclear zinc exopeptidases
0051224 217 2008-09-10 d1y7ea2 Bacterial dinuclear zinc exopeptidases
0050951 2129 2008-09-10 d1xfoa2 Bacterial dinuclear zinc exopeptidases
0051474 1331 2008-09-10 d1z2la1 Bacterial dinuclear zinc exopeptidases
0052940 5050 2008-09-10 d2grea2 Bacterial dinuclear zinc exopeptidases
0046310 1670 2008-09-10 d1de4c3 FolH catalytic domain-like
0053258 1643 2008-09-10 d2or4a3 FolH catalytic domain-like
0051051 936 2008-09-10 d1xova2 N-acetylmuramoyl-L-alanine amidase-like
0039797 356 2005-09-08 d1jwqa_ N-acetylmuramoyl-L-alanine amidase-like
0051428 610 2008-09-10 d1yw6a1 AstE/AspA-like
0052853 1443 2008-09-10 d2g9da1 AstE/AspA-like
0054085 439 2010-05-31 d2i3ca1 AstE/AspA-like
0051427 1446 2008-09-10 d1yw4a1 AstE/AspA-like
0051954 1450 2008-09-10 d2bcoa1 AstE/AspA-like
0053975 467 2010-05-31 d2gu2a1 AstE/AspA-like
0051762 3504 2008-09-10 d2afwa1 Glutaminyl-peptide cyclotransferase-like
0054364 431 2010-05-31 d2odfa1 FGase-like
0054582 467 2010-05-31 d2q7sa1 FGase-like