SUPERFAMILY 1.75 HMM library and genome assignments server

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Phosphoglycerate mutase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 18 SUPERFAMILY models representing the Phosphoglycerate mutase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049178 3305 2008-09-10 d1riia_ Cofactor-dependent phosphoglycerate mutase
0036777 997 2005-09-08 d1e58a_ Cofactor-dependent phosphoglycerate mutase
0050036 1823 2008-09-10 d1v37a_ Cofactor-dependent phosphoglycerate mutase
0037864 1065 2005-09-08 d1fzta_ Cofactor-dependent phosphoglycerate mutase
0043909 930 2005-09-08 d1t8pa_ Cofactor-dependent phosphoglycerate mutase
0036887 1187 2005-09-08 d1ebba_ Cofactor-dependent phosphoglycerate mutase
0048955 2538 2008-09-10 d1qhfa_ Cofactor-dependent phosphoglycerate mutase
0051064 2577 2008-09-10 d1xq9a_ Cofactor-dependent phosphoglycerate mutase
0048946 625 2008-09-10 d1qfxa_ Histidine acid phosphatase
0046349 645 2008-09-10 d1dkla_ Histidine acid phosphatase
0049059 655 2008-09-10 d1qwoa_ Histidine acid phosphatase
0048439 642 2008-09-10 d1nt4a_ Histidine acid phosphatase
0053031 675 2008-09-10 d2hpaa_ Histidine acid phosphatase
0049226 763 2008-09-10 d1rpaa_ Histidine acid phosphatase
0047369 657 2008-09-10 d1ihpa_ Histidine acid phosphatase
0039931 1071 2005-09-08 d1k6ma2 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
0053607 4223 2010-05-31 d1tipa_ 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
0035570 1084 2005-09-08 d1bifa2 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain