SUPERFAMILY 1.75 HMM library and genome assignments server

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vWA-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 17 SUPERFAMILY models representing the vWA-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039774 291 2005-09-08 d1jv2b2 Integrin A (or I) domain
0048147 3971 2008-09-10 d1mf7a_ Integrin A (or I) domain
0046828 1248 2008-09-10 d1fnsa_ Integrin A (or I) domain
0053249 2903 2008-09-10 d2ok5a1 Integrin A (or I) domain
0048922 3554 2008-09-10 d1qc5a_ Integrin A (or I) domain
0036024 902 2005-09-08 d1ck4a_ Integrin A (or I) domain
0045819 4363 2008-09-10 d1atza_ Integrin A (or I) domain
0040480 1142 2005-09-08 d1lfaa_ Integrin A (or I) domain
0048276 4799 2008-09-10 d1n3ya_ Integrin A (or I) domain
0035144 978 2005-09-08 d1aoxa_ Integrin A (or I) domain
0053614 2293 2010-05-31 d1u0oc1 Integrin A (or I) domain
0049400 3719 2008-09-10 d1shux_ Integrin A (or I) domain
0040744 555 2005-09-08 d1m2oa3 Trunk domain of Sec23/24
0040754 588 2005-09-08 d1m2vb3 Trunk domain of Sec23/24
0047568 182 2008-09-10 d1jeya2 Ku70 subunit N-terminal domain
0047569 299 2008-09-10 d1jeyb2 Ku80 subunit N-terminal domain
0051423 167 2008-09-10 d1yvra2 RoRNP C-terminal domain-like