SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Formyltransferase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the Formyltransferase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043482 799 2005-09-08 d1s3ia2 Formyltransferase
0051571 1931 2008-09-10 d1zgha2 Formyltransferase
0040902 808 2005-09-08 d1meoa_ Formyltransferase
0052063 2855 2008-09-10 d2bw0a2 Formyltransferase
0047614 3026 2008-09-10 d1jkxa_ Formyltransferase
0037671 802 2005-09-08 d1fmta2 Formyltransferase
0051998 3018 2008-09-10 d2blna2 Formyltransferase