SUPERFAMILY 1.75 HMM library and genome assignments server

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Dihydrofolate reductase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 15 SUPERFAMILY models representing the Dihydrofolate reductase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047688 820 2008-09-10 d1juva_ Dihydrofolate reductases
0053378 1257 2008-09-10 d8dfra_ Dihydrofolate reductases
0043051 395 2005-09-08 d1qzfa1 Dihydrofolate reductases
0035127 379 2005-09-08 d1aoea_ Dihydrofolate reductases
0049139 946 2008-09-10 d1ra9a_ Dihydrofolate reductases
0046319 909 2008-09-10 d1df7a_ Dihydrofolate reductases
0053343 1325 2008-09-10 d4cd2a_ Dihydrofolate reductases
0039349 347 2005-09-08 d1j3ka_ Dihydrofolate reductases
0047835 1317 2008-09-10 d1kmva_ Dihydrofolate reductases
0044710 361 2005-09-08 d1vdra_ Dihydrofolate reductases
0053318 970 2008-09-10 d3dfra_ Dihydrofolate reductases
0036228 667 2005-09-08 d1d1ga_ Dihydrofolate reductases
0053054 1336 2008-09-10 d2hxva1 RibD C-terminal domain-like
0051896 1334 2008-09-10 d2b3za1 RibD C-terminal domain-like
0051866 810 2008-09-10 d2azna1 RibD C-terminal domain-like