SUPERFAMILY 1.75 HMM library and genome assignments server

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Carbamate kinase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 16 SUPERFAMILY models representing the Carbamate kinase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036708 724 2005-09-08 d1e19a_ Carbamate kinase
0045891 890 2008-09-10 d1b7ba_ Carbamate kinase
0052050 2582 2008-09-10 d2bufa1 N-acetyl-l-glutamate kinase
0052046 3451 2008-09-10 d2btya1 N-acetyl-l-glutamate kinase
0051807 4028 2008-09-10 d2ap9a1 N-acetyl-l-glutamate kinase
0038241 776 2005-09-08 d1gs5a_ N-acetyl-l-glutamate kinase
0051265 3419 2008-09-10 d1ybda1 PyrH-like
0052013 3133 2008-09-10 d2bnea1 PyrH-like
0051682 3300 2008-09-10 d2a1fa1 PyrH-like
0053023 4048 2008-09-10 d2hmfa1 PyrH-like
0053148 3541 2008-09-10 d2j0wa1 PyrH-like
0051530 3272 2008-09-10 d1z9da1 PyrH-like
0052151 2112 2008-09-10 d2cdqa1 PyrH-like
0052030 4282 2008-09-10 d2brxa1 PyrH-like
0051788 3028 2008-09-10 d2akoa1 PyrH-like
0053112 2038 2008-09-10 d2ij9a1 PyrH-like