SUPERFAMILY 1.75 HMM library and genome assignments server

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Alkaline phosphatase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 10 SUPERFAMILY models representing the Alkaline phosphatase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046522 998 2008-09-10 d1ed8a_ Alkaline phosphatase
0037220 258 2005-09-08 d1ew2a_ Alkaline phosphatase
0039941 350 2005-09-08 d1k7ha_ Alkaline phosphatase
0037763 690 2005-09-08 d1fsua_ Arylsulfatase
0042147 853 2005-09-08 d1p49a_ Arylsulfatase
0035207 935 2005-09-08 d1auka_ Arylsulfatase
0047177 3279 2008-09-10 d1hdha_ Arylsulfatase
0037136 808 2005-09-08 d1eqja2 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain
0037019 287 2005-09-08 d1ei6a_ Phosphonoacetate hydrolase
0053063 1374 2008-09-10 d2i09a1 DeoB catalytic domain-like