SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Isocitrate/Isopropylmalate dehydrogenase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 22 SUPERFAMILY models representing the Isocitrate/Isopropylmalate dehydrogenase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045683 1343 2008-09-10 d1a05a_ Dimeric isocitrate & isopropylmalate dehydrogenases
0049509 1494 2008-09-10 d1t0la_ Dimeric isocitrate & isopropylmalate dehydrogenases
0050896 1291 2008-09-10 d1xada_ Dimeric isocitrate & isopropylmalate dehydrogenases
0050329 1342 2008-09-10 d1w0da_ Dimeric isocitrate & isopropylmalate dehydrogenases
0046187 1422 2008-09-10 d1cnza_ Dimeric isocitrate & isopropylmalate dehydrogenases
0051856 1329 2008-09-10 d2ayqa_ Dimeric isocitrate & isopropylmalate dehydrogenases
0050895 1291 2008-09-10 d1xaaa_ Dimeric isocitrate & isopropylmalate dehydrogenases
0048724 3114 2008-09-10 d1pb1a_ Dimeric isocitrate & isopropylmalate dehydrogenases
0046179 1452 2008-09-10 d1cm7a_ Dimeric isocitrate & isopropylmalate dehydrogenases
0040698 750 2005-09-08 d1lwda_ Dimeric isocitrate & isopropylmalate dehydrogenases
0050681 1399 2008-09-10 d1wpwa_ Dimeric isocitrate & isopropylmalate dehydrogenases
0047222 1364 2008-09-10 d1hqsa_ Dimeric isocitrate & isopropylmalate dehydrogenases
0050238 1299 2008-09-10 d1vlca_ Dimeric isocitrate & isopropylmalate dehydrogenases
0039193 258 2005-09-08 d1itwa_ Monomeric isocitrate dehydrogenase
0048816 1152 2008-09-10 d1ptma_ PdxA-like
0043174 682 2005-09-08 d1r8ka_ PdxA-like
0050190 809 2008-09-10 d1vi1a_ PlsX-like
0049813 729 2008-09-10 d1u7na_ PlsX-like
0049112 1186 2008-09-10 d1r5ja_ Phosphotransacetylase
0050255 1277 2008-09-10 d1vmia_ Phosphotransacetylase
0050920 1169 2008-09-10 d1xcoa_ Phosphotransacetylase
0049072 1621 2008-09-10 d1qzta_ Phosphotransacetylase