SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Aspartate/ornithine carbamoyltransferase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 20 SUPERFAMILY models representing the Aspartate/ornithine carbamoyltransferase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036650 401 2005-09-08 d1dxha2 Aspartate/ornithine carbamoyltransferase
0044885 512 2005-09-08 d1vlva2 Aspartate/ornithine carbamoyltransferase
0051827 1824 2008-09-10 d2at2a2 Aspartate/ornithine carbamoyltransferase
0036611 563 2005-09-08 d1duvg1 Aspartate/ornithine carbamoyltransferase
0042299 562 2005-09-08 d1pg5a1 Aspartate/ornithine carbamoyltransferase
0048834 2264 2008-09-10 d1pvva2 Aspartate/ornithine carbamoyltransferase
0040987 564 2005-09-08 d1ml4a1 Aspartate/ornithine carbamoyltransferase
0047669 1506 2008-09-10 d1js1x2 Aspartate/ornithine carbamoyltransferase
0036649 563 2005-09-08 d1dxha1 Aspartate/ornithine carbamoyltransferase
0044884 563 2005-09-08 d1vlva1 Aspartate/ornithine carbamoyltransferase
0051826 2306 2008-09-10 d2at2a1 Aspartate/ornithine carbamoyltransferase
0042024 434 2005-09-08 d1otha2 Aspartate/ornithine carbamoyltransferase
0048833 2315 2008-09-10 d1pvva1 Aspartate/ornithine carbamoyltransferase
0039730 549 2005-09-08 d1js1x1 Aspartate/ornithine carbamoyltransferase
0045168 401 2005-09-08 d2atca2 Aspartate/ornithine carbamoyltransferase
0036612 366 2005-09-08 d1duvg2 Aspartate/ornithine carbamoyltransferase
0042300 261 2005-09-08 d1pg5a2 Aspartate/ornithine carbamoyltransferase
0049701 2329 2008-09-10 d1tuga1 Aspartate/ornithine carbamoyltransferase
0042023 561 2005-09-08 d1otha1 Aspartate/ornithine carbamoyltransferase
0048182 974 2008-09-10 d1ml4a2 Aspartate/ornithine carbamoyltransferase