SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Tetrapyrrole methylase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 10 SUPERFAMILY models representing the Tetrapyrrole methylase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0044765 620 2005-09-08 d1vhva_ Tetrapyrrole methylase
0050755 1015 2008-09-10 d1wyza1 Tetrapyrrole methylase
0050110 3473 2008-09-10 d1va0a1 Tetrapyrrole methylase
0042343 990 2005-09-08 d1pjqa2 Tetrapyrrole methylase
0052425 1451 2008-09-10 d2deka1 Tetrapyrrole methylase
0050440 2441 2008-09-10 d1wdea_ Tetrapyrrole methylase
0049314 3196 2008-09-10 d1s4da_ Tetrapyrrole methylase
0035898 1021 2005-09-08 d1cbfa_ Tetrapyrrole methylase
0051949 1862 2008-09-10 d2bb3a1 Tetrapyrrole methylase
0050153 3911 2008-09-10 d1ve2a1 Tetrapyrrole methylase