SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Periplasmic binding protein-like I superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 18 SUPERFAMILY models representing the Periplasmic binding protein-like I superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045248 750 2005-09-08 d2dria_ L-arabinose binding protein-like
0053227 50 2008-09-10 d2nzug1 L-arabinose binding protein-like
0039803 660 2005-09-08 d1jx6a_ L-arabinose binding protein-like
0049650 38 2008-09-10 d1tlfa_ L-arabinose binding protein-like
0036339 750 2005-09-08 d1dbqa_ L-arabinose binding protein-like
0046641 1403 2008-09-10 d1ewka_ L-arabinose binding protein-like
0054896 479 2010-05-31 d3ckma1 L-arabinose binding protein-like
0044032 719 2005-09-08 d1tjya_ L-arabinose binding protein-like
0052792 2197 2008-09-10 d2fvya1 L-arabinose binding protein-like
0039493 466 2005-09-08 d1jdpa_ L-arabinose binding protein-like
0048996 2604 2008-09-10 d1qo0a_ L-arabinose binding protein-like
0035780 347 2005-09-08 d1byka_ L-arabinose binding protein-like
0045352 807 2005-09-08 d2liva_ L-arabinose binding protein-like
0053377 574 2008-09-10 d8abpa_ L-arabinose binding protein-like
0043335 894 2005-09-08 d1rpja_ L-arabinose binding protein-like
0049989 3766 2008-09-10 d1usga_ L-arabinose binding protein-like
0036537 335 2005-09-08 d1dp4a_ L-arabinose binding protein-like
0046959 2125 2008-09-10 d1gcaa_ L-arabinose binding protein-like