SUPERFAMILY 1.75 HMM library and genome assignments server

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His-Me finger endonucleases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 9 SUPERFAMILY models representing the His-Me finger endonucleases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0037092 25 2005-09-08 d1emvb_ HNH-motif
0045643 27 2005-09-08 d7ceib_ HNH-motif
0037998 170 2005-09-08 d1g8ta_ DNA/RNA non-specific endonuclease
0054326 738 2010-05-31 d2o3ba1 DNA/RNA non-specific endonuclease
0034919 26 2005-09-08 d1a73a_ Intron-encoded homing endonucleases
0044201 123 2005-09-08 d1u3em1 Intron-encoded homing endonucleases
0036822 43 2005-09-08 d1e7la2 Recombination endonuclease VII, N-terminal domain
0042034 70 2005-09-08 d1ouoa_ Endonuclease I
0044583 14 2005-09-08 d1v0da_ Caspase-activated DNase, CAD (DffB, DFF40)