SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

CAD & PB1 domains superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 15 SUPERFAMILY models representing the CAD & PB1 domains superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047342 176 2008-09-10 d1ibxb_ CAD domain
0046268 176 2008-09-10 d1d4ba_ CAD domain
0047341 173 2008-09-10 d1ibxa_ CAD domain
0046095 171 2008-09-10 d1c9fa_ CAD domain
0046691 176 2008-09-10 d1f2ri_ CAD domain
0039115 34 2005-09-08 d1ip9a_ PB1 domain
0048864 457 2008-09-10 d1q1oa_ PB1 domain
0052120 52 2008-09-10 d2c60a1 PB1 domain
0050570 39 2008-09-10 d1wi0a_ PB1 domain
0048553 275 2008-09-10 d1oeyj_ PB1 domain
0050657 84 2008-09-10 d1wmhb_ PB1 domain
0050144 292 2008-09-10 d1vd2a_ PB1 domain
0048552 49 2008-09-10 d1oeya_ PB1 domain
0052303 88 2008-09-10 d2cu1a1 PB1 domain
0050609 270 2008-09-10 d1wj6a_ PB1 domain