SUPERFAMILY 1.75 HMM library and genome assignments server

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Cystatin/monellin superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 13 SUPERFAMILY models representing the Cystatin/monellin superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048202 157 2008-09-10 d1mola_ Monellin
0037137 334 2005-09-08 d1eqka_ Cystatins
0043756 222 2005-09-08 d1stfi_ Cystatins
0048317 672 2008-09-10 d1nb5i_ Cystatins
0046949 994 2008-09-10 d1g96a_ Cystatins
0043319 328 2005-09-08 d1roaa_ Cystatins
0046125 1009 2008-09-10 d1cewi_ Cystatins
0047900 211 2008-09-10 d1kwia_ Cathelicidin motif
0050887 18 2008-09-10 d1x9ya2 Staphopain B, prodomain
0052022 27 2008-09-10 d2bo9b2 Latexin-like
0052021 38 2008-09-10 d2bo9b1 Latexin-like
0053977 62 2010-05-31 d2gu3a2 PepSY-like
0053976 77 2010-05-31 d2gu3a1 PepSY-like