SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

MHC antigen-recognition domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 72 SUPERFAMILY models representing the MHC antigen-recognition domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036280 1940 2005-09-08 d1d5mb2 MHC antigen-recognition domain
0037792 262 2005-09-08 d1fv1a2 MHC antigen-recognition domain
0038943 263 2005-09-08 d1iaka2 MHC antigen-recognition domain
0039955 1689 2005-09-08 d1k8da2 MHC antigen-recognition domain
0040585 1761 2005-09-08 d1lnub2 MHC antigen-recognition domain
0042931 2051 2005-09-08 d1qqda2 MHC antigen-recognition domain
0046112 1517 2008-09-10 d1cd1a2 MHC antigen-recognition domain
0051534 13278 2008-09-10 d1zaga2 MHC antigen-recognition domain
0053680 3580 2010-05-31 d1zvsa2 MHC antigen-recognition domain
0035166 1641 2005-09-08 d1aqdb2 MHC antigen-recognition domain
0036973 2095 2005-09-08 d1efxa2 MHC antigen-recognition domain
0038699 1815 2005-09-08 d1hsaa2 MHC antigen-recognition domain
0039595 2004 2005-09-08 d1jk8b2 MHC antigen-recognition domain
0040256 1507 2005-09-08 d1ktdb2 MHC antigen-recognition domain
0041354 1510 2005-09-08 d1neza2 MHC antigen-recognition domain
0045332 1857 2005-09-08 d2iadb2 MHC antigen-recognition domain
0049096 1202 2008-09-10 d1r3ha2 MHC antigen-recognition domain
0053654 3502 2010-05-31 d1ydpa2 MHC antigen-recognition domain
0034827 1891 2005-09-08 d1a1na2 MHC antigen-recognition domain
0036615 1967 2005-09-08 d1duza2 MHC antigen-recognition domain
0038554 230 2005-09-08 d1hdma2 MHC antigen-recognition domain
0038990 263 2005-09-08 d1ieaa2 MHC antigen-recognition domain
0039961 32 2005-09-08 d1k8ib2 MHC antigen-recognition domain
0040827 1733 2005-09-08 d1m6oa2 MHC antigen-recognition domain
0043533 246 2005-09-08 d1s9va2 MHC antigen-recognition domain
0047092 1514 2008-09-10 d1gzqa2 MHC antigen-recognition domain
0052058 12966 2008-09-10 d2bvpa2 MHC antigen-recognition domain
0035752 1800 2005-09-08 d1bx2b2 MHC antigen-recognition domain
0037256 1531 2005-09-08 d1exua2 MHC antigen-recognition domain
0038861 1672 2005-09-08 d1i3rb2 MHC antigen-recognition domain
0039866 1438 2005-09-08 d1k2db2 MHC antigen-recognition domain
0040584 263 2005-09-08 d1lnua2 MHC antigen-recognition domain
0042893 1911 2005-09-08 d1qo3a2 MHC antigen-recognition domain
0046058 1228 2008-09-10 d1c16a2 MHC antigen-recognition domain
0050385 10799 2008-09-10 d1w72a2 MHC antigen-recognition domain
0053676 3326 2010-05-31 d1zt1a2 MHC antigen-recognition domain
0035039 1969 2005-09-08 d1agda2 MHC antigen-recognition domain
0036913 1959 2005-09-08 d1ed3a2 MHC antigen-recognition domain
0038657 2213 2005-09-08 d1hoca2 MHC antigen-recognition domain
0039593 256 2005-09-08 d1jk8a2 MHC antigen-recognition domain
0040116 1661 2005-09-08 d1kjva2 MHC antigen-recognition domain
0040930 1964 2005-09-08 d1mhea2 MHC antigen-recognition domain
0044538 258 2005-09-08 d1uvqa2 MHC antigen-recognition domain
0048801 1344 2008-09-10 d1pqza2 MHC antigen-recognition domain
0053617 3126 2010-05-31 d1vgka2 MHC antigen-recognition domain
0036378 1774 2005-09-08 d1de4a2 MHC antigen-recognition domain
0037794 1741 2005-09-08 d1fv1b2 MHC antigen-recognition domain
0038944 1793 2005-09-08 d1iakb2 MHC antigen-recognition domain
0039959 207 2005-09-08 d1k8ia2 MHC antigen-recognition domain
0040621 889 2005-09-08 d1lqva_ MHC antigen-recognition domain
0043009 1861 2005-09-08 d1qvoa2 MHC antigen-recognition domain
0046614 2101 2008-09-10 d1es0b2 MHC antigen-recognition domain
0051953 11907 2008-09-10 d2bcka2 MHC antigen-recognition domain
0054532 1222 2010-05-31 d2po6a2 MHC antigen-recognition domain
0035334 1157 2005-09-08 d1b3ja2 MHC antigen-recognition domain
0037149 262 2005-09-08 d1es0a2 MHC antigen-recognition domain
0038700 1837 2005-09-08 d1hsba2 MHC antigen-recognition domain
0039865 262 2005-09-08 d1k2da2 MHC antigen-recognition domain
0040458 2017 2005-09-08 d1ld9a2 MHC antigen-recognition domain
0041946 936 2005-09-08 d1onqa2 MHC antigen-recognition domain
0045486 1874 2005-09-08 d2vaaa2 MHC antigen-recognition domain
0050009 8976 2008-09-10 d1uvqb2 MHC antigen-recognition domain
0053675 2251 2010-05-31 d1zs8a2 MHC antigen-recognition domain
0034899 1585 2005-09-08 d1a6ab2 MHC antigen-recognition domain
0036715 2051 2005-09-08 d1e27a2 MHC antigen-recognition domain
0038556 36 2005-09-08 d1hdmb2 MHC antigen-recognition domain
0039499 1175 2005-09-08 d1je6a2 MHC antigen-recognition domain
0040019 1187 2005-09-08 d1kcgc_ MHC antigen-recognition domain
0040927 1256 2005-09-08 d1mhca2 MHC antigen-recognition domain
0043534 1777 2005-09-08 d1s9vb2 MHC antigen-recognition domain
0047577 2468 2008-09-10 d1jfma_ MHC antigen-recognition domain
0053319 9055 2008-09-10 d3frua2 MHC antigen-recognition domain