SUPERFAMILY 1.75 HMM library and genome assignments server

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Diaminopimelate epimerase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 12 SUPERFAMILY models representing the Diaminopimelate epimerase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046029 703 2008-09-10 d1bwza2 Diaminopimelate epimerase
0046028 467 2008-09-10 d1bwza1 Diaminopimelate epimerase
0043560 253 2005-09-08 d1sdja1 PhzC/PhzF-like
0051111 732 2008-09-10 d1xuba2 PhzC/PhzF-like
0049368 563 2008-09-10 d1sdja2 PhzC/PhzF-like
0044177 663 2005-09-08 d1u0ka1 PhzC/PhzF-like
0043521 236 2005-09-08 d1s7ja_ PhzC/PhzF-like
0051110 441 2008-09-10 d1xuba1 PhzC/PhzF-like
0049758 581 2008-09-10 d1u0ka2 PhzC/PhzF-like
0044048 105 2005-09-08 d1tm0a_ Proline racemase
0054022 309 2010-05-31 d2h9fa2 PA0793-like
0054021 322 2010-05-31 d2h9fa1 PA0793-like