SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

GFP-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the GFP-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0051069 790 2008-09-10 d1xqma_ Fluorescent proteins
0041029 148 2005-09-08 d1moua_ Fluorescent proteins
0038095 148 2005-09-08 d1ggxa_ Fluorescent proteins
0044381 148 2005-09-08 d1uisa_ Fluorescent proteins
0040194 143 2005-09-08 d1kp5a_ Fluorescent proteins
0054675 153 2010-05-31 d2rh7a1 Fluorescent proteins
0041147 144 2005-09-08 d1mywa_ Fluorescent proteins
0038418 51 2005-09-08 d1h4ua1 Domain G2 of nidogen-1