SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

FKBP-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 30 SUPERFAMILY models representing the FKBP-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0037129 553 2005-09-08 d1eq3a_ FKBP immunophilin/proline isomerase
0040249 974 2005-09-08 d1kt0a2 FKBP immunophilin/proline isomerase
0042239 928 2005-09-08 d1pbka_ FKBP immunophilin/proline isomerase
0048097 2320 2008-09-10 d1m5ya3 FKBP immunophilin/proline isomerase
0039396 549 2005-09-08 d1j6ya_ FKBP immunophilin/proline isomerase
0040804 570 2005-09-08 d1m5ya2 FKBP immunophilin/proline isomerase
0043832 896 2005-09-08 d1t11a3 FKBP immunophilin/proline isomerase
0040252 972 2005-09-08 d1kt1a2 FKBP immunophilin/proline isomerase
0042567 768 2005-09-08 d1q1ca2 FKBP immunophilin/proline isomerase
0035884 1011 2005-09-08 d1c9ha_ FKBP immunophilin/proline isomerase
0039784 851 2005-09-08 d1jvwa_ FKBP immunophilin/proline isomerase
0045075 1035 2005-09-08 d1yata_ FKBP immunophilin/proline isomerase
0039255 890 2005-09-08 d1ix5a_ FKBP immunophilin/proline isomerase
0040355 911 2005-09-08 d1l1pa_ FKBP immunophilin/proline isomerase
0043182 976 2005-09-08 d1r9ha_ FKBP immunophilin/proline isomerase
0037500 894 2005-09-08 d1fd9a_ FKBP immunophilin/proline isomerase
0040250 657 2005-09-08 d1kt0a3 FKBP immunophilin/proline isomerase
0042333 541 2005-09-08 d1pina2 FKBP immunophilin/proline isomerase
0049810 3293 2008-09-10 d1u79a_ FKBP immunophilin/proline isomerase
0035600 1058 2005-09-08 d1bkfa_ FKBP immunophilin/proline isomerase
0039667 569 2005-09-08 d1jnsa_ FKBP immunophilin/proline isomerase
0041183 993 2005-09-08 d1n1aa_ FKBP immunophilin/proline isomerase
0044934 905 2005-09-08 d1w26a3 FKBP immunophilin/proline isomerase
0038779 715 2005-09-08 d1hxva_ FKBP immunophilin/proline isomerase
0040253 644 2005-09-08 d1kt1a3 FKBP immunophilin/proline isomerase
0042634 677 2005-09-08 d1q6ha_ FKBP immunophilin/proline isomerase
0038237 351 2005-09-08 d1grja2 GreA transcript cleavage factor, C-terminal domain
0052517 1395 2008-09-10 d2etna2 GreA transcript cleavage factor, C-terminal domain
0052573 1395 2008-09-10 d2f23a2 GreA transcript cleavage factor, C-terminal domain
0041898 2 2005-09-08 d1okga3 3-mercaptopyruvate sulfurtransferase, C-terminal domain