SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Cdc48 domain 2-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the Cdc48 domain 2-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0044984 40 2005-09-08 d1wlfa1 Cdc48 domain 2-like
0036202 51 2005-09-08 d1cz4a2 Cdc48 domain 2-like
0042710 50 2005-09-08 d1qcsa2 Cdc48 domain 2-like
0036123 40 2005-09-08 d1cr5a2 Cdc48 domain 2-like
0036730 57 2005-09-08 d1e32a3 Cdc48 domain 2-like