SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Prokaryotic type KH domain (KH-domain type II) superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 10 SUPERFAMILY models representing the Prokaryotic type KH domain (KH-domain type II) superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046797 1264 2008-09-10 d1fjgc1 Prokaryotic type KH domain (KH-domain type II)
0038592 1061 2005-09-08 d1hh2p3 Prokaryotic type KH domain (KH-domain type II)
0054585 968 2010-05-31 d2qalc1 Prokaryotic type KH domain (KH-domain type II)
0047716 842 2008-09-10 d1k0ra2 Prokaryotic type KH domain (KH-domain type II)
0046552 891 2008-09-10 d1egaa2 Prokaryotic type KH domain (KH-domain type II)
0036740 415 2005-09-08 d1e3ha4 Prokaryotic type KH domain (KH-domain type II)
0050549 926 2008-09-10 d1wh9a_ Prokaryotic type KH domain (KH-domain type II)
0047188 841 2008-09-10 d1hh2p2 Prokaryotic type KH domain (KH-domain type II)
0039833 804 2005-09-08 d1k0ra3 Prokaryotic type KH domain (KH-domain type II)
0050483 893 2008-09-10 d1wf3a2 Prokaryotic type KH domain (KH-domain type II)