SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Protease propeptides/inhibitors superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 13 SUPERFAMILY models representing the Protease propeptides/inhibitors superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045841 362 2008-09-10 d1ayea2 Pancreatic carboxypeptidase, activation domain
0048845 351 2008-09-10 d1pyta_ Pancreatic carboxypeptidase, activation domain
0048431 318 2008-09-10 d1nsaa2 Pancreatic carboxypeptidase, activation domain
0047658 300 2008-09-10 d1jqga2 Pancreatic carboxypeptidase, activation domain
0048734 339 2008-09-10 d1pcaa1 Pancreatic carboxypeptidase, activation domain
0047902 311 2008-09-10 d1kwma2 Pancreatic carboxypeptidase, activation domain
0052023 350 2008-09-10 d2boaa2 Pancreatic carboxypeptidase, activation domain
0048728 297 2008-09-10 d1pbaa_ Pancreatic carboxypeptidase, activation domain
0049437 535 2008-09-10 d1spbp_ Subtilase propeptides/inhibitors
0047433 295 2008-09-10 d1itpa_ Subtilase propeptides/inhibitors
0049360 75 2008-09-10 d1scjb_ Subtilase propeptides/inhibitors
0049516 205 2008-09-10 d1t1ea2 Subtilase propeptides/inhibitors
0047836 302 2008-09-10 d1kn6a_ Prohormone convertase 1 pro-domain