SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Dimeric alpha+beta barrel superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 41 SUPERFAMILY models representing the Dimeric alpha+beta barrel superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048188 141 2008-09-10 d1mlia_ Muconalactone isomerase, MLI
0049174 3161 2008-09-10 d1ri7a2 Lrp/AsnC-like transcriptional regulator C-terminal domain
0052160 2155 2008-09-10 d2cfxa2 Lrp/AsnC-like transcriptional regulator C-terminal domain
0052162 2207 2008-09-10 d2cg4a2 Lrp/AsnC-like transcriptional regulator C-terminal domain
0047284 1585 2008-09-10 d1i1ga2 Lrp/AsnC-like transcriptional regulator C-terminal domain
0048013 241 2008-09-10 d1lq9a_ Actinorhodin biosynthesis monooxygenase ActVa-Orf6
0042616 296 2005-09-08 d1q4ra_ Plant stress-induced protein
0044097 270 2005-09-08 d1tr0a_ Plant stress-induced protein
0049187 344 2008-09-10 d1rjja_ Plant stress-induced protein
0049441 395 2008-09-10 d1sqea_ PG130-like
0050908 557 2008-09-10 d1xbwa_ PG130-like
0047442 986 2008-09-10 d1iuja_ PG130-like
0049743 614 2008-09-10 d1tz0a_ PG130-like
0053961 600 2010-05-31 d2go8a1 PG130-like
0048903 664 2008-09-10 d1q8ba_ Hypothetical protein YjcS
0041120 161 2005-09-08 d1mwqa_ YciI-like
0049704 41 2008-09-10 d1tuwa_ Polyketide synthesis cyclase
0043520 148 2005-09-08 d1s7ia_ DGPF domain (Pfam 04946)
0050149 148 2008-09-10 d1vdha_ Chlorite dismutase-like
0049512 160 2008-09-10 d1t0tv_ Chlorite dismutase-like
0054497 464 2010-05-31 d2pd1a1 PA3566-like
0045015 667 2005-09-08 d1x7va_ PA3566-like
0049703 287 2008-09-10 d1tuva_ PA3566-like
0051166 59 2008-09-10 d1y0ha_ PA3566-like
0054385 1104 2010-05-31 d2omoa1 PA3566-like
0053018 81 2008-09-10 d2hiqa1 Hypothetical protein YdhR
0050289 486 2008-09-10 d1vqsa_ NIPSNAP
0050293 438 2008-09-10 d1vqya1 NIPSNAP
0052967 408 2008-09-10 d2gvka1 Dyp-type peroxidase-like
0052377 148 2008-09-10 d2d3qa1 Dyp-type peroxidase-like
0053111 422 2008-09-10 d2iiza1 Dyp-type peroxidase-like
0052757 242 2008-09-10 d2ftra1 EthD-like
0052703 364 2008-09-10 d2fiua1 Atu0297-like
0052136 70 2008-09-10 d2cb2a1 SOR-like
0054381 132 2010-05-31 d2okqa1 YbaA-like
0054134 78 2010-05-31 d2ifxa1 MmlI-like
0054361 2 2010-05-31 d2od4a1 Marine metagenome family DABB2
0053640 271 2010-05-31 d1x8da1 YiiL-like
0054403 2 2010-05-31 d2op5a1 Marine metagenome family DABB1
0054363 2 2010-05-31 d2od6a1 Marine metagenome family DABB1
0054503 3 2010-05-31 d2pgca1 Marine metagenome family DABB3