SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Nucleoside diphosphate kinase, NDK superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 20 SUPERFAMILY models representing the Nucleoside diphosphate kinase, NDK superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046562 1535 2008-09-10 d1ehwa_ Nucleoside diphosphate kinase, NDK
0048778 1532 2008-09-10 d1pkua1 Nucleoside diphosphate kinase, NDK
0051862 1540 2008-09-10 d2az3a1 Nucleoside diphosphate kinase, NDK
0048362 1545 2008-09-10 d1nhkl_ Nucleoside diphosphate kinase, NDK
0050982 1527 2008-09-10 d1xiqa_ Nucleoside diphosphate kinase, NDK
0047706 1519 2008-09-10 d1jxva_ Nucleoside diphosphate kinase, NDK
0049823 1537 2008-09-10 d1u8wa_ Nucleoside diphosphate kinase, NDK
0052491 1543 2008-09-10 d2dyaa1 Nucleoside diphosphate kinase, NDK
0045939 1525 2008-09-10 d1be4a_ Nucleoside diphosphate kinase, NDK
0048448 1529 2008-09-10 d1nuea_ Nucleoside diphosphate kinase, NDK
0051631 1537 2008-09-10 d1zs6a1 Nucleoside diphosphate kinase, NDK
0048316 1540 2008-09-10 d1nb2a_ Nucleoside diphosphate kinase, NDK
0050638 1537 2008-09-10 d1wkja1 Nucleoside diphosphate kinase, NDK
0047204 1563 2008-09-10 d1hlwa_ Nucleoside diphosphate kinase, NDK
0049319 1557 2008-09-10 d1s57a_ Nucleoside diphosphate kinase, NDK
0051941 1515 2008-09-10 d2b8qa1 Nucleoside diphosphate kinase, NDK
0048435 1534 2008-09-10 d1nsqa_ Nucleoside diphosphate kinase, NDK
0051068 1510 2008-09-10 d1xqia1 Nucleoside diphosphate kinase, NDK
0047746 1542 2008-09-10 d1k44a_ Nucleoside diphosphate kinase, NDK
0050392 1556 2008-09-10 d1w7wa_ Nucleoside diphosphate kinase, NDK