SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Acylphosphatase/BLUF domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 10 SUPERFAMILY models representing the Acylphosphatase/BLUF domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049941 1062 2008-09-10 d1ulra_ Acylphosphatase-like
0051747 1009 2008-09-10 d2acya_ Acylphosphatase-like
0050347 1059 2008-09-10 d1w2ia_ Acylphosphatase-like
0047079 1027 2008-09-10 d1gxua_ Acylphosphatase-like
0049983 924 2008-09-10 d1urra_ Acylphosphatase-like
0045805 1028 2008-09-10 d1apsa_ Acylphosphatase-like
0050769 242 2008-09-10 d1x0pa1 BLUF domain
0052074 242 2008-09-10 d2byca1 BLUF domain
0051381 242 2008-09-10 d1yrxa1 BLUF domain
0052052 242 2008-09-10 d2buna1 BLUF domain