SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

HMA, heavy metal-associated domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 15 SUPERFAMILY models representing the HMA, heavy metal-associated domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047700 5081 2008-09-10 d1jwwa_ HMA, heavy metal-associated domain
0049356 4157 2008-09-10 d1sb6a_ HMA, heavy metal-associated domain
0046197 5011 2008-09-10 d1cpza_ HMA, heavy metal-associated domain
0048637 5017 2008-09-10 d1osda_ HMA, heavy metal-associated domain
0045769 5024 2008-09-10 d1afja_ HMA, heavy metal-associated domain
0047891 4763 2008-09-10 d1kvja_ HMA, heavy metal-associated domain
0046867 4811 2008-09-10 d1fvqa_ HMA, heavy metal-associated domain
0049047 3946 2008-09-10 d1qupa2 HMA, heavy metal-associated domain
0046107 3430 2008-09-10 d1cc8a_ HMA, heavy metal-associated domain
0048621 4975 2008-09-10 d1oq3a_ HMA, heavy metal-associated domain
0047718 4921 2008-09-10 d1k0va_ HMA, heavy metal-associated domain
0046759 4223 2008-09-10 d1fe0a_ HMA, heavy metal-associated domain
0048906 4898 2008-09-10 d1q8la_ HMA, heavy metal-associated domain
0045832 4811 2008-09-10 d1aw0a_ HMA, heavy metal-associated domain
0048239 4980 2008-09-10 d1mwza_ HMA, heavy metal-associated domain