SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Hedgehog/DD-peptidase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the Hedgehog/DD-peptidase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047953 334 2008-09-10 d1lbua2 Muramoyl-pentapeptide carboxypeptidase
0044756 57 2005-09-08 d1vhha_ Hedgehog (development protein), N-terminal signaling domain
0053084 215 2008-09-10 d2ibge1 Hedgehog (development protein), N-terminal signaling domain
0044169 34 2005-09-08 d1tzpa_ MepA-like
0043112 82 2005-09-08 d1r44a_ VanX-like
0054728 742 2010-05-31 d2vo9a1 VanY-like