SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Alpha-L RNA-binding motif superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 9 SUPERFAMILY models representing the Alpha-L RNA-binding motif superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035794 828 2005-09-08 d1c06a_ Ribosomal protein S4
0053986 2767 2010-05-31 d2gy9d1 Ribosomal protein S4
0037616 746 2005-09-08 d1fjgd_ Ribosomal protein S4
0036496 286 2005-09-08 d1dm9a_ Heat shock protein 15 kD
0047115 843 2008-09-10 d1h3fa2 Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
0039540 755 2005-09-08 d1jh3a_ Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
0044787 982 2005-09-08 d1vioa2 Pseudouridine synthase RsuA N-terminal domain
0047871 2997 2008-09-10 d1kska3 Pseudouridine synthase RsuA N-terminal domain
0042206 247 2005-09-08 d1p9ka_ YbcJ-like