SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

RBP11-like subunits of RNA polymerase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 6 SUPERFAMILY models representing the RBP11-like subunits of RNA polymerase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038895 339 2005-09-08 d1i6va1 RNA polymerase alpha subunit dimerisation domain
0035473 376 2005-09-08 d1bdfa1 RNA polymerase alpha subunit dimerisation domain
0039233 353 2005-09-08 d1iw7a1 RNA polymerase alpha subunit dimerisation domain
0038873 157 2005-09-08 d1i50c1 RNA polymerase alpha subunit dimerisation domain
0051060 248 2008-09-10 d1xppa_ RBP11/RpoL
0038879 109 2005-09-08 d1i50k_ RBP11/RpoL