SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

GAD domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the GAD domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0052391 235 2008-09-10 d2d6fc2 GAD domain
0037937 220 2005-09-08 d1g51a2 GAD domain
0051613 57 2008-09-10 d1zq1c2 GAD domain
0046051 947 2008-09-10 d1c0aa2 GAD domain
0054479 17 2010-05-31 d2p8ta2 PH0730 C-terminal domain-like