SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Profilin (actin-binding protein) superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 9 SUPERFAMILY models representing the Profilin (actin-binding protein) superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046690 516 2008-09-10 d1f2ka_ Profilin (actin-binding protein)
0045758 476 2008-09-10 d1acfa_ Profilin (actin-binding protein)
0046926 501 2008-09-10 d1g5ua_ Profilin (actin-binding protein)
0046250 452 2008-09-10 d1d1ja_ Profilin (actin-binding protein)
0045097 127 2005-09-08 d1ypra_ Profilin (actin-binding protein)
0053324 504 2008-09-10 d3nula_ Profilin (actin-binding protein)
0046791 460 2008-09-10 d1fila_ Profilin (actin-binding protein)
0046198 502 2008-09-10 d1cqaa_ Profilin (actin-binding protein)
0048791 454 2008-09-10 d1pnea_ Profilin (actin-binding protein)