SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

TATA-box binding protein-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 12 SUPERFAMILY models representing the TATA-box binding protein-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0041037 267 2005-09-08 d1mp9a2 TATA-box binding protein (TBP), C-terminal domain
0035929 266 2005-09-08 d1cdwa2 TATA-box binding protein (TBP), C-terminal domain
0045101 267 2005-09-08 d1ytba2 TATA-box binding protein (TBP), C-terminal domain
0035063 269 2005-09-08 d1aisa1 TATA-box binding protein (TBP), C-terminal domain
0042875 268 2005-09-08 d1qnaa1 TATA-box binding protein (TBP), C-terminal domain
0041036 268 2005-09-08 d1mp9a1 TATA-box binding protein (TBP), C-terminal domain
0035928 266 2005-09-08 d1cdwa1 TATA-box binding protein (TBP), C-terminal domain
0045100 268 2005-09-08 d1ytba1 TATA-box binding protein (TBP), C-terminal domain
0035064 268 2005-09-08 d1aisa2 TATA-box binding protein (TBP), C-terminal domain
0042876 265 2005-09-08 d1qnaa2 TATA-box binding protein (TBP), C-terminal domain
0041039 42 2005-09-08 d1mpga2 DNA repair glycosylase, N-terminal domain
0036895 53 2005-09-08 d1ebma2 DNA repair glycosylase, N-terminal domain