SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Bet v1-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 42 SUPERFAMILY models representing the Bet v1-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046430 450 2008-09-10 d1e09a_ Pathogenesis-related protein 10 (PR10)-like
0047354 441 2008-09-10 d1ifva_ Pathogenesis-related protein 10 (PR10)-like
0046017 470 2008-09-10 d1bv1a_ Pathogenesis-related protein 10 (PR10)-like
0051990 435 2008-09-10 d2bk0a1 Pathogenesis-related protein 10 (PR10)-like
0047345 438 2008-09-10 d1icxa_ Pathogenesis-related protein 10 (PR10)-like
0049728 407 2008-09-10 d1txca1 Pathogenesis-related protein 10 (PR10)-like
0050926 380 2008-09-10 d1xdfa1 Pathogenesis-related protein 10 (PR10)-like
0046811 487 2008-09-10 d1fm4a_ Pathogenesis-related protein 10 (PR10)-like
0050208 155 2008-09-10 d1vjha_ Pathogenesis-related protein 10 (PR10)-like
0046586 759 2008-09-10 d1em2a_ STAR domain
0048001 782 2008-09-10 d1ln1a_ STAR domain
0054545 528 2010-05-31 d2psoa1 STAR domain
0047675 814 2008-09-10 d1jssa_ STAR domain
0052007 624 2008-09-10 d2bmoa2 Ring hydroxylating alpha subunit catalytic domain
0049937 920 2008-09-10 d1ulia2 Ring hydroxylating alpha subunit catalytic domain
0052424 180 2008-09-10 d2de6a2 Ring hydroxylating alpha subunit catalytic domain
0050686 915 2008-09-10 d1wqla2 Ring hydroxylating alpha subunit catalytic domain
0046549 936 2008-09-10 d1eg9a2 Ring hydroxylating alpha subunit catalytic domain
0051879 638 2008-09-10 d2b1xa2 Ring hydroxylating alpha subunit catalytic domain
0051454 651 2008-09-10 d1z01a2 Ring hydroxylating alpha subunit catalytic domain
0051685 224 2008-09-10 d2a1la1 Phoshatidylinositol transfer protein, PITP
0053606 221 2010-05-31 d1t27a_ Phoshatidylinositol transfer protein, PITP
0051031 468 2008-09-10 d1xn5a_ AHSA1 domain
0054256 707 2010-05-31 d2k5ga1 AHSA1 domain
0054964 809 2010-05-31 d3elia1 AHSA1 domain
0050822 981 2008-09-10 d1x53a1 AHSA1 domain
0051115 1585 2008-09-10 d1xuva_ AHSA1 domain
0050953 1572 2008-09-10 d1xfsa_ AHSA1 domain
0054143 669 2010-05-31 d2il5a1 AHSA1 domain
0051529 1536 2008-09-10 d1z94a1 AHSA1 domain
0052916 81 2008-09-10 d2gkca1 AHSA1 domain
0051032 165 2008-09-10 d1xn6a_ AHSA1 domain
0054263 774 2010-05-31 d2nn5a1 AHSA1 domain
0049515 1523 2008-09-10 d1t17a_ oligoketide cyclase/dehydrase-like
0052379 2024 2008-09-10 d2d4ra1 oligoketide cyclase/dehydrase-like
0054669 967 2010-05-31 d2rera1 oligoketide cyclase/dehydrase-like
0052677 64 2008-09-10 d2ffsa1 PA1206-like
0054620 237 2010-05-31 d2qpva1 Atu1531-like
0054900 865 2010-05-31 d3cnwa1 Atu1531-like
0053731 113 2010-05-31 d2b79a1 Smu440-like
0054296 807 2010-05-31 d2ns9a1 CoxG-like
0054496 406 2010-05-31 d2pcsa1 CoxG-like