SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Molybdenum cofactor-binding domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 8 SUPERFAMILY models representing the Molybdenum cofactor-binding domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049206 2749 2008-09-10 d1rm6a2 Molybdenum cofactor-binding domain
0046330 2730 2008-09-10 d1dgja4 Molybdenum cofactor-binding domain
0039729 675 2005-09-08 d1jrob2 Molybdenum cofactor-binding domain
0048288 1410 2008-09-10 d1n62b2 Molybdenum cofactor-binding domain
0044866 556 2005-09-08 d1vlba4 Molybdenum cofactor-binding domain
0037702 655 2005-09-08 d1fo4a5 Molybdenum cofactor-binding domain
0046775 2045 2008-09-10 d1ffvb2 Molybdenum cofactor-binding domain
0043860 220 2005-09-08 d1t3qb2 Molybdenum cofactor-binding domain