SUPERFAMILY 1.75 HMM library and genome assignments server

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Phospholipase D/nuclease superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 12 SUPERFAMILY models representing the Phospholipase D/nuclease superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035785 801 2005-09-08 d1byra_ Nuclease
0046667 2635 2008-09-10 d1f0ia1 Phospholipase D
0037309 477 2005-09-08 d1f0ia2 Phospholipase D
0039811 46 2005-09-08 d1jy1a2 Tyrosyl-DNA phosphodiesterase TDP1
0042591 56 2005-09-08 d1q32a2 Tyrosyl-DNA phosphodiesterase TDP1
0039810 48 2005-09-08 d1jy1a1 Tyrosyl-DNA phosphodiesterase TDP1
0042590 38 2005-09-08 d1q32a1 Tyrosyl-DNA phosphodiesterase TDP1
0050933 735 2008-09-10 d1xdpa4 Polyphosphate kinase C-terminal domain
0053240 751 2008-09-10 d2o8ra4 Polyphosphate kinase C-terminal domain
0050932 2985 2008-09-10 d1xdpa3 Polyphosphate kinase C-terminal domain
0053239 2318 2008-09-10 d2o8ra3 Polyphosphate kinase C-terminal domain
0053903 5 2010-05-31 d2f5tx2 TrmB middle domain-like