SUPERFAMILY 1.75 HMM library and genome assignments server

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Ribosomal protein L6 superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 11 SUPERFAMILY models representing the Ribosomal protein L6 superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0037526 325 2005-09-08 d1ffk11 Ribosomal protein L6
0054599 973 2010-05-31 d2qamg2 Ribosomal protein L6
0054179 1058 2010-05-31 d2j01h1 Ribosomal protein L6
0043293 333 2005-09-08 d1rl6a1 Ribosomal protein L6
0054777 1085 2010-05-31 d2zjre2 Ribosomal protein L6
0054598 1087 2010-05-31 d2qamg1 Ribosomal protein L6
0053786 1044 2010-05-31 d2cqla1 Ribosomal protein L6
0037527 262 2005-09-08 d1ffk12 Ribosomal protein L6
0054776 930 2010-05-31 d2zjre1 Ribosomal protein L6
0054180 930 2010-05-31 d2j01h2 Ribosomal protein L6
0043294 288 2005-09-08 d1rl6a2 Ribosomal protein L6