SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

DNA ligase/mRNA capping enzyme, catalytic domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 11 SUPERFAMILY models representing the DNA ligase/mRNA capping enzyme, catalytic domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045687 930 2008-09-10 d1a0ia2 ATP-dependent DNA ligase catalytic domain
0046865 1023 2008-09-10 d1fvia2 ATP-dependent DNA ligase catalytic domain
0050886 1713 2008-09-10 d1x9na3 ATP-dependent DNA ligase catalytic domain
0035285 267 2005-09-08 d1b04a_ Adenylation domain of NAD+-dependent DNA ligase
0049580 1166 2008-09-10 d1ta8a_ Adenylation domain of NAD+-dependent DNA ligase
0044679 266 2005-09-08 d1v9pa3 Adenylation domain of NAD+-dependent DNA ligase
0036424 268 2005-09-08 d1dgsa3 Adenylation domain of NAD+-dependent DNA ligase
0048677 839 2008-09-10 d1p16a2 mRNA capping enzyme
0046164 905 2008-09-10 d1ckma2 mRNA capping enzyme
0050929 38 2008-09-10 d1xdna_ RNA ligase
0049326 113 2008-09-10 d1s68a_ RNA ligase