SUPERFAMILY 1.75 HMM library and genome assignments server

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SAICAR synthase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the SAICAR synthase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0052189 1038 2008-09-10 d2cnqa1 SAICAR synthase
0040269 266 2005-09-08 d1kuta_ SAICAR synthase
0035636 204 2005-09-08 d1bo1a_ Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
0044167 154 2005-09-08 d1tzda_ Inositol polyphosphate kinase (IPK)
0044935 153 2005-09-08 d1w2fa_ Inositol polyphosphate kinase (IPK)