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  Home > SCOP hierarchy > Protein kinase-like (PK-like) > Hidden Markov models

Protein kinase-like (PK-like) superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 78 SUPERFAMILY models representing the Protein kinase-like (PK-like) superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036014 9 2005-09-08 d1cjaa_ Actin-fragmin kinase, catalytic domain
0046494 947 2008-09-10 d1e8ya4 Phoshoinositide 3-kinase (PI3K), catalytic domain
0047332 135 2008-09-10 d1ia9a_ MHCK/EF2 kinase
0039408 564 2005-09-08 d1j7la_ APH phosphotransferases
0054547 1333 2010-05-31 d2pula1 APH phosphotransferases
0053681 1386 2010-05-31 d1zyla1 APH phosphotransferases
0041315 366 2005-09-08 d1nd4a_ APH phosphotransferases
0054536 1535 2010-05-31 d2ppqa1 APH phosphotransferases
0034801 10204 2005-09-08 d1a06a_ Protein kinases, catalytic subunit
0037668 10199 2005-09-08 d1fmka3 Protein kinases, catalytic subunit
0038940 10218 2005-09-08 d1ia8a_ Protein kinases, catalytic subunit
0040180 10213 2005-09-08 d1koba_ Protein kinases, catalytic subunit
0041710 10227 2005-09-08 d1o6la_ Protein kinases, catalytic subunit
0043074 10192 2005-09-08 d1r0pa_ Protein kinases, catalytic subunit
0044907 10193 2005-09-08 d1vr2a_ Protein kinases, catalytic subunit
0049786 24485 2008-09-10 d1u59a_ Protein kinases, catalytic subunit
0053164 30607 2008-09-10 d2java1 Protein kinases, catalytic subunit
0036031 10188 2005-09-08 d1ckia_ Protein kinases, catalytic subunit
0038413 10189 2005-09-08 d1h4la_ Protein kinases, catalytic subunit
0039792 10193 2005-09-08 d1jwha_ Protein kinases, catalytic subunit
0041095 10215 2005-09-08 d1muoa_ Protein kinases, catalytic subunit
0042354 10174 2005-09-08 d1pkga_ Protein kinases, catalytic subunit
0044203 10184 2005-09-08 d1u46a_ Protein kinases, catalytic subunit
0049347 30575 2008-09-10 d1s9ia_ Protein kinases, catalytic subunit
0051133 30411 2008-09-10 d1xwsa_ Protein kinases, catalytic subunit
0054833 10075 2010-05-31 d3blha1 Protein kinases, catalytic subunit
0035371 10186 2005-09-08 d1b6cb_ Protein kinases, catalytic subunit
0037731 10188 2005-09-08 d1fpua_ Protein kinases, catalytic subunit
0040670 10189 2005-09-08 d1lufa_ Protein kinases, catalytic subunit
0041767 10196 2005-09-08 d1ob3a_ Protein kinases, catalytic subunit
0043658 10200 2005-09-08 d1sm2a_ Protein kinases, catalytic subunit
0046042 24313 2008-09-10 d1byga_ Protein kinases, catalytic subunit
0048011 25468 2008-09-10 d1lpua_ Protein kinases, catalytic subunit
0049834 30528 2008-09-10 d1ua2a_ Protein kinases, catalytic subunit
0054221 10121 2010-05-31 d2jfla1 Protein kinases, catalytic subunit
0037572 10187 2005-09-08 d1fgka_ Protein kinases, catalytic subunit
0038659 10162 2005-09-08 d1howa_ Protein kinases, catalytic subunit
0040179 10194 2005-09-08 d1koaa2 Protein kinases, catalytic subunit
0042918 10192 2005-09-08 d1qpca_ Protein kinases, catalytic subunit
0044547 10199 2005-09-08 d1uwha_ Protein kinases, catalytic subunit
0047088 30531 2008-09-10 d1gz8a_ Protein kinases, catalytic subunit
0049538 24618 2008-09-10 d1t4ha_ Protein kinases, catalytic subunit
0052889 30496 2008-09-10 d2gfsa1 Protein kinases, catalytic subunit
0038373 10216 2005-09-08 d1h1wa_ Protein kinases, catalytic subunit
0039686 10181 2005-09-08 d1jpaa_ Protein kinases, catalytic subunit
0041048 10178 2005-09-08 d1mqba_ Protein kinases, catalytic subunit
0042315 10193 2005-09-08 d1phka_ Protein kinases, catalytic subunit
0046210 5695 2008-09-10 d1csna_ Protein kinases, catalytic subunit
0048785 25438 2008-09-10 d1pmea_ Protein kinases, catalytic subunit
0050990 30525 2008-09-10 d1xjda_ Protein kinases, catalytic subunit
0035157 10223 2005-09-08 d1apme_ Protein kinases, catalytic subunit
0037714 10226 2005-09-08 d1fota_ Protein kinases, catalytic subunit
0039145 10197 2005-09-08 d1ir3a_ Protein kinases, catalytic subunit
0040302 10213 2005-09-08 d1kwpa_ Protein kinases, catalytic subunit
0041719 10186 2005-09-08 d1o6ya_ Protein kinases, catalytic subunit
0043269 10177 2005-09-08 d1rjba_ Protein kinases, catalytic subunit
0044924 10212 2005-09-08 d1vzoa_ Protein kinases, catalytic subunit
0047734 24411 2008-09-10 d1k3aa_ Protein kinases, catalytic subunit
0049795 30610 2008-09-10 d1u5ra_ Protein kinases, catalytic subunit
0037369 10218 2005-09-08 d1f3mc_ Protein kinases, catalytic subunit
0038477 10210 2005-09-08 d1h8fa_ Protein kinases, catalytic subunit
0039870 10201 2005-09-08 d1k2pa_ Protein kinases, catalytic subunit
0042707 10190 2005-09-08 d1qcfa3 Protein kinases, catalytic subunit
0044407 10212 2005-09-08 d1ukha_ Protein kinases, catalytic subunit
0046998 24314 2008-09-10 d1gjoa_ Protein kinases, catalytic subunit
0049348 30589 2008-09-10 d1s9ja_ Protein kinases, catalytic subunit
0051877 30540 2008-09-10 d2b1pa1 Protein kinases, catalytic subunit
0035615 10198 2005-09-08 d1blxa_ Protein kinases, catalytic subunit
0037803 10200 2005-09-08 d1fvra_ Protein kinases, catalytic subunit
0039603 10211 2005-09-08 d1jksa_ Protein kinases, catalytic subunit
0040727 10192 2005-09-08 d1m14a_ Protein kinases, catalytic subunit
0041927 10197 2005-09-08 d1omwa3 Protein kinases, catalytic subunit
0044036 10208 2005-09-08 d1tkia_ Protein kinases, catalytic subunit
0046180 24434 2008-09-10 d1cm8a_ Protein kinases, catalytic subunit
0048206 24509 2008-09-10 d1mp8a_ Protein kinases, catalytic subunit
0050905 24525 2008-09-10 d1xbba_ Protein kinases, catalytic subunit
0041592 357 2005-09-08 d1nw1a_ Choline kinase
0044090 4438 2005-09-08 d1tqia2 RIO1-like kinases


Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.