SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

FAD-binding/transporter-associated domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 25 SUPERFAMILY models representing the FAD-binding/transporter-associated domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0044931 1059 2005-09-08 d1w1oa2 FAD-linked oxidases, N-terminal domain
0047282 578 2008-09-10 d1i19a2 FAD-linked oxidases, N-terminal domain
0046490 3215 2008-09-10 d1e8ga2 FAD-linked oxidases, N-terminal domain
0046342 3064 2008-09-10 d1diqa2 FAD-linked oxidases, N-terminal domain
0046672 774 2008-09-10 d1f0xa2 FAD-linked oxidases, N-terminal domain
0050017 2451 2008-09-10 d1uxya1 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
0047231 2942 2008-09-10 d1hska1 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
0039727 310 2005-09-08 d1jroa4 CO dehydrogenase flavoprotein N-terminal domain-like
0043862 317 2005-09-08 d1t3qc2 CO dehydrogenase flavoprotein N-terminal domain-like
0037703 218 2005-09-08 d1fo4a6 CO dehydrogenase flavoprotein N-terminal domain-like
0041229 303 2005-09-08 d1n62c2 CO dehydrogenase flavoprotein N-terminal domain-like
0049208 931 2008-09-10 d1rm6b2 CO dehydrogenase flavoprotein N-terminal domain-like
0037565 315 2005-09-08 d1ffvc2 CO dehydrogenase flavoprotein N-terminal domain-like
0054286 1833 2010-05-31 d2nqwa1 CorC/HlyC domain-like
0054525 1861 2010-05-31 d2plsa1 CorC/HlyC domain-like
0054456 1630 2010-05-31 d2p3ha1 CorC/HlyC domain-like
0054328 1934 2010-05-31 d2o3ga1 CorC/HlyC domain-like
0054678 1438 2010-05-31 d2rk5a1 CorC/HlyC domain-like
0054524 2036 2010-05-31 d2plia1 CorC/HlyC domain-like
0054450 2015 2010-05-31 d2p13a1 CorC/HlyC domain-like
0054318 1852 2010-05-31 d2o1ra1 CorC/HlyC domain-like
0054639 1846 2010-05-31 d2r2za1 CorC/HlyC domain-like
0054460 1945 2010-05-31 d2p4pa1 CorC/HlyC domain-like
0054353 2046 2010-05-31 d2oaia1 CorC/HlyC domain-like
0054932 1910 2010-05-31 d3deda1 CorC/HlyC domain-like