SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

DNase I-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 11 SUPERFAMILY models representing the DNase I-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049450 2514 2008-09-10 d1sr4b_ DNase I-like
0047174 3763 2008-09-10 d1hd7a_ DNase I-like
0052475 3967 2008-09-10 d2dnja_ DNase I-like
0050453 266 2008-09-10 d1wdua_ DNase I-like
0035081 554 2005-09-08 d1akoa_ DNase I-like
0050312 3130 2008-09-10 d1vyba_ DNase I-like
0052568 3249 2008-09-10 d2f1na1 DNase I-like
0048441 622 2008-09-10 d1ntfa_ Inositol polyphosphate 5-phosphatase (IPP5)
0047330 2271 2008-09-10 d1i9za_ Inositol polyphosphate 5-phosphatase (IPP5)
0052422 2974 2008-09-10 d2ddra1 Sphingomyelin phosphodiesterase-like
0051655 308 2008-09-10 d1zwxa1 Sphingomyelin phosphodiesterase-like