SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Metallo-hydrolase/oxidoreductase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 31 SUPERFAMILY models representing the Metallo-hydrolase/oxidoreductase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045185 1634 2005-09-08 d2bc2a_ Zn metallo-beta-lactamase
0039825 1428 2005-09-08 d1k07a_ Zn metallo-beta-lactamase
0053954 6674 2010-05-31 d2gmna1 Zn metallo-beta-lactamase
0043666 1960 2005-09-08 d1smla_ Zn metallo-beta-lactamase
0036363 866 2005-09-08 d1dd6a_ Zn metallo-beta-lactamase
0048073 6330 2008-09-10 d1m2xa_ Zn metallo-beta-lactamase
0045733 6401 2008-09-10 d1a7ta_ Zn metallo-beta-lactamase
0050873 643 2008-09-10 d1x8ha_ Zn metallo-beta-lactamase
0047843 6353 2008-09-10 d1ko3a_ Zn metallo-beta-lactamase
0051022 6326 2008-09-10 d1xm8a_ Glyoxalase II (hydroxyacylglutathione hydrolase)
0054603 6940 2010-05-31 d2qeda1 Glyoxalase II (hydroxyacylglutathione hydrolase)
0042783 1382 2005-09-08 d1qh5a_ Glyoxalase II (hydroxyacylglutathione hydrolase)
0051275 6548 2008-09-10 d1ycga2 ROO N-terminal domain-like
0046465 6535 2008-09-10 d1e5da2 ROO N-terminal domain-like
0050252 8479 2008-09-10 d1vmea2 ROO N-terminal domain-like
0050210 6301 2008-09-10 d1vjna_ Hypothetical protein TM0207
0048716 6482 2008-09-10 d1p9ea_ Methyl parathion hydrolase
0051102 1539 2008-09-10 d1xtoa_ Coenzyme PQQ synthesis protein B, PqqB
0050726 1825 2008-09-10 d1ww1a1 RNase Z-like
0052141 1897 2008-09-10 d2cbna1 RNase Z-like
0051194 3916 2008-09-10 d1y44a1 RNase Z-like
0051980 4827 2008-09-10 d2biba2 Pce catalytic domain-like
0051591 5298 2008-09-10 d1zkpa1 YhfI-like
0051863 6376 2008-09-10 d2az4a1 beta-CASP RNA-metabolising hydrolases
0054105 519 2010-05-31 d2i7xa1 beta-CASP RNA-metabolising hydrolases
0053827 4667 2010-05-31 d2dkfa1 beta-CASP RNA-metabolising hydrolases
0054104 500 2010-05-31 d2i7ta1 beta-CASP RNA-metabolising hydrolases
0051638 5065 2008-09-10 d1ztca1 TM0894-like
0054482 1138 2010-05-31 d2p97a1 Ava3068-like
0053773 2776 2010-05-31 d2cfua2 Alkylsulfatase-like
0054569 5058 2010-05-31 d2q0ia1 PqsE-like