SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

DNA breaking-rejoining enzymes superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 9 SUPERFAMILY models representing the DNA breaking-rejoining enzymes superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0034815 2171 2005-09-08 d1a0pa2 Lambda integrase-like, catalytic core
0053598 3445 2010-05-31 d1p7da_ Lambda integrase-like, catalytic core
0045588 440 2005-09-08 d4crxa2 Lambda integrase-like, catalytic core
0037653 9 2005-09-08 d1floa2 Lambda integrase-like, catalytic core
0035058 1372 2005-09-08 d1aiha_ Lambda integrase-like, catalytic core
0039910 121 2005-09-08 d1k4ta2 Eukaryotic DNA topoisomerase I, catalytic core
0034861 119 2005-09-08 d1a41a_ Eukaryotic DNA topoisomerase I, catalytic core
0034845 121 2005-09-08 d1a31a1 Eukaryotic DNA topoisomerase I, catalytic core
0043356 121 2005-09-08 d1rr8c1 Eukaryotic DNA topoisomerase I, catalytic core