SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Peptide deformylase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 9 SUPERFAMILY models representing the Peptide deformylase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0040562 381 2005-09-08 d1lmea_ Peptide deformylase
0039816 382 2005-09-08 d1jyma_ Peptide deformylase
0040634 381 2005-09-08 d1lrya_ Peptide deformylase
0040557 380 2005-09-08 d1lm6a_ Peptide deformylase
0035693 384 2005-09-08 d1bs4a_ Peptide deformylase
0051210 1460 2008-09-10 d1y6ha_ Peptide deformylase
0040623 378 2005-09-08 d1lqya_ Peptide deformylase
0040555 385 2005-09-08 d1lm4a_ Peptide deformylase
0050041 1460 2008-09-10 d1v3ya_ Peptide deformylase