SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Fibrinogen C-terminal domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 8 SUPERFAMILY models representing the Fibrinogen C-terminal domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0040702 476 2005-09-08 d1lwub1 Fibrinogen C-terminal domain-like
0037859 482 2005-09-08 d1fzcb1 Fibrinogen C-terminal domain-like
0040734 478 2005-09-08 d1m1jb1 Fibrinogen C-terminal domain-like
0039477 456 2005-09-08 d1jc9a_ Fibrinogen C-terminal domain-like
0037600 463 2005-09-08 d1fida_ Fibrinogen C-terminal domain-like
0040703 478 2005-09-08 d1lwuc1 Fibrinogen C-terminal domain-like
0037860 418 2005-09-08 d1fzda_ Fibrinogen C-terminal domain-like
0040735 462 2005-09-08 d1m1jc1 Fibrinogen C-terminal domain-like