SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Serpins superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 17 SUPERFAMILY models representing the Serpins superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0034927 739 2005-09-08 d1a7ca_ Serpins
0039580 745 2005-09-08 d1jjo.1 Serpins
0051067 2534 2008-09-10 d1xqga_ Serpins
0037307 746 2005-09-08 d1f0c.1 Serpins
0042041 743 2005-09-08 d1ovaa_ Serpins
0035196 758 2005-09-08 d1atta_ Serpins
0039986 736 2005-09-08 d1k9oi_ Serpins
0039087 739 2005-09-08 d1imva_ Serpins
0043572 732 2005-09-08 d1seka_ Serpins
0036689 754 2005-09-08 d1e05i_ Serpins
0041076 714 2005-09-08 d1mtp.1 Serpins
0035184 745 2005-09-08 d1as4.1 Serpins
0039630 750 2005-09-08 d1jmja_ Serpins
0038626 753 2005-09-08 d1hle.1 Serpins
0042850 746 2005-09-08 d1qlpa_ Serpins
0035774 752 2005-09-08 d1by7a_ Serpins
0040612 746 2005-09-08 d1lq8.1 Serpins