SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Heme-dependent catalase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 10 SUPERFAMILY models representing the Heme-dependent catalase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043623 383 2005-09-08 d1si8a_ Heme-dependent catalases
0038517 388 2005-09-08 d1hbza_ Heme-dependent catalases
0035960 374 2005-09-08 d1cf9a2 Heme-dependent catalases
0043021 389 2005-09-08 d1qwla_ Heme-dependent catalases
0036848 387 2005-09-08 d1e93a_ Heme-dependent catalases
0034869 377 2005-09-08 d1a4ea_ Heme-dependent catalases
0045585 387 2005-09-08 d4blca_ Heme-dependent catalases
0040837 380 2005-09-08 d1m7sa_ Heme-dependent catalases
0036413 387 2005-09-08 d1dgfa_ Heme-dependent catalases
0049798 643 2008-09-10 d1u5ua_ Allene oxide synthase