SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

HydB/Nqo4-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the HydB/Nqo4-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038381 376 2005-09-08 d1h2rl_ Nickel-iron hydrogenase, large subunit
0035906 321 2005-09-08 d1cc1l_ Nickel-iron hydrogenase, large subunit
0037746 324 2005-09-08 d1frfl_ Nickel-iron hydrogenase, large subunit
0045288 398 2005-09-08 d2frvb_ Nickel-iron hydrogenase, large subunit
0036736 385 2005-09-08 d1e3db_ Nickel-iron hydrogenase, large subunit
0052775 1614 2008-09-10 d2fug41 Nqo4-like