SUPERFAMILY 1.75 HMM library and genome assignments server

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Dehydroquinate synthase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the Dehydroquinate synthase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036562 420 2005-09-08 d1dqsa_ Dehydroquinate synthase, DHQS
0044392 421 2005-09-08 d1ujna_ Dehydroquinate synthase, DHQS
0047854 1411 2008-09-10 d1kq3a_ Iron-containing alcohol dehydrogenase
0043359 559 2005-09-08 d1rrma_ Iron-containing alcohol dehydrogenase
0050240 1419 2008-09-10 d1vlja_ Iron-containing alcohol dehydrogenase
0047653 1292 2008-09-10 d1jq5a_ Iron-containing alcohol dehydrogenase
0041672 569 2005-09-08 d1o2da_ Iron-containing alcohol dehydrogenase
0048580 3864 2008-09-10 d1oj7a_ Iron-containing alcohol dehydrogenase